Index

A

add_axvspan() (in module lazyfmri.plotting) add_event() (lazyfmri.fitting.NideconvFitter method) add_label_to_line() (lazyfmri.plotting.Defaults method) add_result_to_plot() (lazyfmri.plotting.LazyCorr method) annotate_cortical_ribbon() (in module lazyfmri.plotting)

ANOVA (class in lazyfmri.glm) ants_to_spm_moco() (in module lazyfmri.utils) ants_truncate_intensities() (in module lazyfmri.utils) array_to_df() (lazyfmri.dataset.ParseExpToolsFile static method) assemble_fmriprep_wf() (in module lazyfmri.utils)

B

basic_qa() (lazyfmri.dataset.ParseFuncFile method) BIDSFile (class in lazyfmri.utils)

BLUE (lazyfmri.utils.color attribute) BOLD (lazyfmri.utils.color attribute)

C

calculate_r2() (in module lazyfmri.glm) calculate_tsnr() (in module lazyfmri.utils) calculate_tstats() (in module lazyfmri.glm) change_name_set_index() (lazyfmri.fitting.NideconvFitter method) check_for_run_index() (lazyfmri.fitting.NideconvFitter class method) check_input() (lazyfmri.dataset.ParseEyetrackerFile method) check_input_is_list() (in module lazyfmri.dataset) color (class in lazyfmri.utils) colormap_ticks() (lazyfmri.plotting.LazyColorbar static method) concat_dataframes() (lazyfmri.dataset.ParseEyetrackerFile method) concat_func() (lazyfmri.fitting.InitFitter class method) concat_onsets() (lazyfmri.fitting.InitFitter class method) concat_runs() (lazyfmri.fitting.InitFitter class method) concatenate() (lazyfmri.fitting.InitFitter method)

conform_ax_to_obj() (in module lazyfmri.plotting) connect_hue_pairs() (lazyfmri.plotting.LazyBar method) connect_pairs() (lazyfmri.plotting.LazyBar method) convert2unit() (in module lazyfmri.utils) convert_to_rgb() (in module lazyfmri.utils) convolve_hrf() (in module lazyfmri.glm) convolve_stims() (lazyfmri.glm.GenericGLM method) copy_hdr() (in module lazyfmri.utils) correct_baseline() (lazyfmri.fitting.Epoch static method) create_design() (lazyfmri.glm.GenericGLM method) crossvalidate() (lazyfmri.fitting.CVDeconv method) CurveFitter (class in lazyfmri.fitting) CVDeconv (class in lazyfmri.fitting) CYAN (lazyfmri.utils.color attribute)

D

DARKCYAN (lazyfmri.utils.color attribute) DataFilter (class in lazyfmri.preproc) Dataset (class in lazyfmri.dataset) DatasetCollector (class in lazyfmri.dataset) decode() (in module lazyfmri.utils) Defaults (class in lazyfmri.plotting) define_events() (lazyfmri.fitting.NideconvFitter method) define_hdf_file() (lazyfmri.dataset.ParseEyetrackerFile method)

define_hrf() (in module lazyfmri.glm) (lazyfmri.glm.GenericGLM method) define_model() (lazyfmri.fitting.NideconvFitter method) define_stimvector() (lazyfmri.glm.GenericGLM method) derive_n_regressors() (lazyfmri.fitting.NideconvFitter method) design_variance() (in module lazyfmri.glm) disassemble_fmriprep_wf() (in module lazyfmri.utils) double_gamma() (in module lazyfmri.glm) double_gamma_with_d() (in module lazyfmri.fitting)

E

END (lazyfmri.utils.color attribute) Epoch (class in lazyfmri.fitting) epoch_events() (lazyfmri.fitting.Epoch method) epoch_input() (lazyfmri.fitting.Epoch method) epoch_runs() (lazyfmri.fitting.Epoch method)

epoch_subjects() (lazyfmri.fitting.Epoch method) epoch_tasks() (lazyfmri.fitting.Epoch method) error_function() (in module lazyfmri.fitting) EventRegression (class in lazyfmri.preproc) events_per_run() (lazyfmri.dataset.ParseExpToolsFile method) events_single_run() (lazyfmri.dataset.ParseExpToolsFile method)

F

fetch_accuracy() (lazyfmri.dataset.Dataset method) fetch_blinks() (lazyfmri.dataset.Dataset method) fetch_blinks_run() (lazyfmri.dataset.ParseEyetrackerFile method) fetch_extracted_data() (lazyfmri.dataset.ParseEyetrackerFile method) fetch_eye_func_time() (lazyfmri.dataset.ParseEyetrackerFile method) fetch_eye_tracker_time() (lazyfmri.dataset.ParseEyetrackerFile method) fetch_eyeblinks() (lazyfmri.dataset.ParseEyetrackerFile method) fetch_fmri() (lazyfmri.dataset.Dataset method) fetch_onsets() (lazyfmri.dataset.Dataset method) fetch_physio() (lazyfmri.dataset.Dataset method) fetch_relevant_info() (lazyfmri.dataset.ParseEyetrackerFile method) fetch_rts() (lazyfmri.dataset.Dataset method) fetch_saccades() (lazyfmri.dataset.ParseEyetrackerFile method) fetch_trace() (lazyfmri.dataset.Dataset method) fig_annot() (in module lazyfmri.plotting) files (lazyfmri.utils.FindFiles attribute) filter_for_nans() (in module lazyfmri.utils) filter_input() (lazyfmri.preproc.DataFilter method) filter_kwargs() (in module lazyfmri.dataset) filter_runs() (lazyfmri.preproc.DataFilter method) filter_subjects() (lazyfmri.preproc.DataFilter method) filter_tasks() (lazyfmri.preproc.DataFilter method) find_files() (lazyfmri.utils.FindFiles static method) find_intersection() (in module lazyfmri.utils) find_max_r2() (lazyfmri.fitting.GLM method)

find_missing() (in module lazyfmri.utils) find_nearest() (in module lazyfmri.utils) find_pars_index() (lazyfmri.fitting.InitFitter static method) find_r2() (lazyfmri.fitting.GLM method) FindFiles (class in lazyfmri.utils) first_level_matrix() (in module lazyfmri.glm) first_order() (lazyfmri.fitting.CurveFitter static method) fit() (lazyfmri.fitting.NideconvFitter method) (lazyfmri.fitting.ParameterFitter method) (lazyfmri.glm.GenericGLM method) fit_first_level() (in module lazyfmri.glm) FitHRFparams (class in lazyfmri.fitting) format_epoch_pars() (lazyfmri.fitting.InitFitter method) format_ev() (lazyfmri.fitting.GLM class method) format_evs_for_plotting() (lazyfmri.fitting.InitFitter class method) format_fitters() (lazyfmri.fitting.NideconvFitter method) format_fm() (lazyfmri.fitting.GLM class method) format_for_plotting() (lazyfmri.fitting.InitFitter static method) format_obj() (lazyfmri.fitting.GLM class method) format_output() (lazyfmri.fitting.GLM class method) format_r2() (lazyfmri.fitting.GLM class method) format_tstats() (lazyfmri.fitting.GLM class method) Freq (class in lazyfmri.preproc) from_hdf() (lazyfmri.dataset.Dataset method) FWHM (class in lazyfmri.fitting) fwhm_lines() (in module lazyfmri.fitting)

G

GenericGLM (class in lazyfmri.glm) get_accuracy() (lazyfmri.dataset.ParseExpToolsFile method) get_base_name() (lazyfmri.dataset.ParseEyetrackerFile method) get_basisset_timecourses() (lazyfmri.fitting.NideconvFitter method) get_bids_basepath() (lazyfmri.utils.BIDSFile method) get_bids_ids() (lazyfmri.utils.BIDSFile method) get_bids_info() (lazyfmri.dataset.ParseEyetrackerFile method) get_bids_root() (lazyfmri.utils.BIDSFile method) get_bids_workbase() (lazyfmri.utils.BIDSFile method) get_bids_workflow() (lazyfmri.utils.BIDSFile method) get_copes() (lazyfmri.fitting.GLM class method) get_curves_from_fitter() (lazyfmri.fitting.NideconvFitter static method) get_data() (lazyfmri.dataset.ParseFuncFile method) get_event_prediction() (in module lazyfmri.glm) get_event_predictions() (in module lazyfmri.glm) get_event_predictions_from_fitter() (lazyfmri.fitting.NideconvFitter static method) get_events() (lazyfmri.dataset.ParseExpToolsFile static method) get_file_from_substring() (in module lazyfmri.utils) get_first_existing() (in module lazyfmri.utils) get_freq() (in module lazyfmri.preproc) get_ids() (in module lazyfmri.utils)

get_onset_df() (lazyfmri.dataset.ParseExpToolsFile method) get_physio() (lazyfmri.dataset.ParsePhysioFile method) get_predictions_per_event() (lazyfmri.fitting.NideconvFitter method) get_responses() (lazyfmri.dataset.ParseExpToolsFile method) get_result() (lazyfmri.fitting.GLM method) (lazyfmri.preproc.DataFilter method) get_rts_df() (lazyfmri.dataset.ParseExpToolsFile method) get_runs() (lazyfmri.dataset.ParseExpToolsFile static method) get_slope_between_points() (lazyfmri.fitting.HRFMetrics class method) get_subjects() (lazyfmri.dataset.ParseExpToolsFile static method) get_tr() (lazyfmri.dataset.ParseEyetrackerFile method) (lazyfmri.dataset.ParseGiftiFile method) get_unique_ids() (in module lazyfmri.utils) get_vertex_nr() (in module lazyfmri.utils) get_vols() (lazyfmri.dataset.ParseEyetrackerFile method) GLM (class in lazyfmri.fitting) glm_input() (lazyfmri.fitting.GLM method) glm_runs() (lazyfmri.fitting.GLM class method) glm_subjects() (lazyfmri.fitting.GLM class method) glm_tasks() (lazyfmri.fitting.GLM class method) glover_hrf() (in module lazyfmri.glm) GREEN (lazyfmri.utils.color attribute)

H

half_max_x() (lazyfmri.fitting.FWHM method)

highpass_dct() (in module lazyfmri.preproc) HRFMetrics (class in lazyfmri.fitting)

I

ICA (class in lazyfmri.preproc) index_accuracy() (lazyfmri.dataset.ParseExpToolsFile static method) index_func() (lazyfmri.dataset.ParseFuncFile method) index_onset() (lazyfmri.dataset.ParseExpToolsFile method) init_params() (lazyfmri.fitting.CurveFitter method)

InitFitter (class in lazyfmri.fitting) interpolate_fir_condition() (lazyfmri.fitting.NideconvFitter method) interpolate_fir_subjects() (lazyfmri.fitting.NideconvFitter method) iterative_fit() (lazyfmri.fitting.FitHRFparams method) iterative_search() (in module lazyfmri.fitting)

L

launch_itksnap() (in module lazyfmri.utils) LazyBar (class in lazyfmri.plotting) LazyColorbar (class in lazyfmri.plotting) LazyCorr (class in lazyfmri.plotting) lazyfmri.dataset module lazyfmri.fitting module lazyfmri.glm module

lazyfmri.plotting module lazyfmri.preproc module lazyfmri.utils module LazyHist (class in lazyfmri.plotting) LazyLine (class in lazyfmri.plotting) LazyPRF (class in lazyfmri.plotting) lowpass_savgol() (in module lazyfmri.preproc)

M

MAGENTA (lazyfmri.utils.color attribute) make_between_cm() (in module lazyfmri.utils) make_binary_cm() (in module lazyfmri.utils) make_chicken_csv() (in module lazyfmri.utils) make_diverging_cm() (in module lazyfmri.utils) make_diverging_list() (in module lazyfmri.utils) make_onsets_for_response_fitter() (lazyfmri.fitting.NideconvFitter method) make_polar_cmap() (in module lazyfmri.utils) make_prediction() (in module lazyfmri.fitting) make_response_fitter() (lazyfmri.fitting.NideconvFitter method) make_stats_cm() (in module lazyfmri.utils) make_stimulus_vector() (in module lazyfmri.glm) make_wm_pial_ticks() (in module lazyfmri.plotting)

match_lists_on() (in module lazyfmri.utils) melodic() (lazyfmri.preproc.ICA method) melt_events() (lazyfmri.fitting.NideconvFitter method) merge_basissets_with_full_hrf() (lazyfmri.fitting.InitFitter method) merge_dfs() (lazyfmri.fitting.InitFitter static method) module lazyfmri.dataset lazyfmri.fitting lazyfmri.glm lazyfmri.plotting lazyfmri.preproc lazyfmri.utils multiselect_from_df() (in module lazyfmri.utils)

N

NideconvFitter (class in lazyfmri.fitting)

O

onsets_to_fsl() (lazyfmri.dataset.ParseExpToolsFile method)

P

pairwise() (in module lazyfmri.utils) ParameterFitter (class in lazyfmri.fitting) parameters_for_basis_sets() (lazyfmri.fitting.InitFitter method) parameters_for_epochs() (lazyfmri.fitting.InitFitter method) parameters_for_tc_condition() (lazyfmri.fitting.InitFitter method) parameters_for_tc_subjects() (lazyfmri.fitting.InitFitter method) parse_kwargs_to_dict() (in module lazyfmri.utils) ParseExpToolsFile (class in lazyfmri.dataset) ParseEyetrackerFile (class in lazyfmri.dataset) ParseFuncFile (class in lazyfmri.dataset) ParseGiftiFile (class in lazyfmri.dataset) ParsePhysioFile (class in lazyfmri.dataset) percent_change() (in module lazyfmri.utils) plot() (lazyfmri.plotting.LazyBar method) (lazyfmri.plotting.LazyCorr method) (lazyfmri.plotting.LazyHist method) (lazyfmri.plotting.LazyLine method) (lazyfmri.plotting.LazyPRF method) plot_areas_per_event() (lazyfmri.fitting.NideconvFitter method) plot_average_per_event() (lazyfmri.fitting.NideconvFitter method) plot_average_per_voxel() (lazyfmri.fitting.NideconvFitter method) plot_bars() (lazyfmri.glm.Posthoc method) plot_contrast_matrix() (lazyfmri.glm.GenericGLM method) plot_design_matrix() (lazyfmri.glm.GenericGLM method) plot_ev_predictions() (lazyfmri.fitting.GLM method) plot_freq() (lazyfmri.preproc.Freq method)

plot_fwhm() (lazyfmri.fitting.NideconvFitter method) plot_hrf_across_depth() (lazyfmri.fitting.NideconvFitter method) plot_hrf_auc() (lazyfmri.fitting.HRFMetrics class method) plot_model_fits() (lazyfmri.preproc.EventRegression class method) plot_power_spectrum() (lazyfmri.preproc.EventRegression method) plot_profile_for_debugging() (lazyfmri.fitting.HRFMetrics class method) plot_result() (lazyfmri.preproc.EventRegression class method) plot_task_avg() (lazyfmri.preproc.DataFilter method) plot_timecourse() (lazyfmri.preproc.Freq method) plot_timecourse_prediction() (lazyfmri.preproc.EventRegression method) plot_trace_and_heatmap() (lazyfmri.dataset.ParseEyetrackerFile method) plot_ttp() (lazyfmri.fitting.NideconvFitter method) Posthoc (class in lazyfmri.glm) power_spectrum() (lazyfmri.preproc.DataFilter class method) predict_out_of_set() (lazyfmri.fitting.CVDeconv method) prepare_data() (lazyfmri.fitting.InitFitter method) prepare_onsets() (lazyfmri.fitting.InitFitter method) preprocess_edf_files() (lazyfmri.dataset.ParseEyetrackerFile method) preprocess_exptools_file() (lazyfmri.dataset.ParseExpToolsFile method) preprocess_func_file() (lazyfmri.dataset.ParseFuncFile method) preprocess_physio_file() (lazyfmri.dataset.ParsePhysioFile method) print_cmd_highlight() (in module lazyfmri.utils) print_results() (lazyfmri.plotting.LazyCorr method) process_edf_file() (lazyfmri.dataset.ParseExpToolsFile method) process_exptools_files() (lazyfmri.dataset.ParseExpToolsFile method) profiles_from_parameters() (lazyfmri.fitting.FitHRFparams method) PURPLE (lazyfmri.utils.color attribute)

R

read_chicken_csv() (in module lazyfmri.utils) RED (lazyfmri.utils.color attribute) regress() (lazyfmri.preproc.ICA method) regress_input() (lazyfmri.preproc.EventRegression method) regress_runs() (lazyfmri.preproc.EventRegression method) regress_subjects() (lazyfmri.preproc.EventRegression method) regress_tasks() (lazyfmri.preproc.EventRegression method) RegressOut (class in lazyfmri.preproc) remove_files() (in module lazyfmri.utils) resample_stim_vector() (in module lazyfmri.glm) resample_stimvector() (lazyfmri.glm.GenericGLM method)

return_combinations() (lazyfmri.fitting.CVDeconv method) return_kde() (lazyfmri.plotting.LazyHist method) return_metrics() (lazyfmri.fitting.HRFMetrics method) reverse_sign() (in module lazyfmri.utils) RGBToPyCmap() (in module lazyfmri.plotting) round_decimals_down() (in module lazyfmri.utils) round_decimals_up() (in module lazyfmri.utils) run() (lazyfmri.fitting.CurveFitter method) run_anova() (lazyfmri.glm.ANOVA method) run_ica() (lazyfmri.dataset.ParseFuncFile method) run_posthoc() (lazyfmri.glm.Posthoc method) run_shell_wrapper() (in module lazyfmri.utils)

S

SDT() (in module lazyfmri.utils) second_order() (lazyfmri.fitting.CurveFitter static method) select_files_from_bids() (in module lazyfmri.utils) select_from_df() (in module lazyfmri.utils) set_indices() (lazyfmri.dataset.ParseEyetrackerFile method) set_metadata() (lazyfmri.dataset.ParseGiftiFile method) set_plotting_defaults() (lazyfmri.fitting.NideconvFitter method) set_task_index() (lazyfmri.dataset.ParseEyetrackerFile method) SetAttributes (class in lazyfmri.dataset) show() (lazyfmri.plotting.LazyColorbar method) single_filter() (lazyfmri.preproc.DataFilter class method)

single_fitter() (lazyfmri.fitting.CVDeconv method) single_glm() (lazyfmri.fitting.GLM class method) single_regression() (lazyfmri.preproc.EventRegression class method) single_response_fitter() (lazyfmri.fitting.ParameterFitter static method) sort_posthoc() (lazyfmri.glm.Posthoc method) split_bids_components() (in module lazyfmri.utils) spm_hrf() (in module lazyfmri.glm) str2operator() (in module lazyfmri.utils) string2float() (in module lazyfmri.utils) string2list() (in module lazyfmri.utils) summary() (lazyfmri.preproc.ICA method)

T

third_order() (lazyfmri.fitting.CurveFitter static method) timecourses_condition() (lazyfmri.fitting.NideconvFitter method)

to4D() (lazyfmri.dataset.Dataset method) to_hdf() (lazyfmri.dataset.Dataset method) to_nifti() (lazyfmri.dataset.ParseFuncFile method)

U

UNDERLINE (lazyfmri.utils.color attribute)

update_kwargs() (in module lazyfmri.utils) update_rc() (lazyfmri.plotting.Defaults method)

V

validate_cli_inputs() (in module lazyfmri.utils)

verbose() (in module lazyfmri.utils) vols() (lazyfmri.dataset.ParseEyetrackerFile method)

W

write_edf_to_hdf() (lazyfmri.dataset.ParseEyetrackerFile method)

write_file() (lazyfmri.dataset.ParseGiftiFile method)

Y

YELLOW (lazyfmri.utils.color attribute)